CoRTecS

BIP

Bioinformatics Core Facility

Agronomie | Biologie végétale | Ecologie | Environnement | Evolution | Biologie cellulaire | Imagerie | Biologie moléculaire | Biochimie | Génomique | Biologie systémique | Développement | Biologie structurale

The core facility

Agronomie, Biologie végétale, Ecologie, Environnement, Evolution Bioinformatics Core Facility

  • Head Manager of the core facility Valérie COGNAT
  • Scientifical Manager Philippe GIEGE
  • Technical Manager Valérie COGNAT
  • UPR 2357 - IBMP / Institut de biologie moléculaire des plantes
  • CNRS
  • Campus centre : Esplanade
  • Monosite
  • Service delivery
    • to the academic community
  • Collaborations of research
    • with the academic community
  • Affiliated institution of administrative supervision
    • CNRS
BIP

The bioinformatics core facility provides bioinformatics services for the researchers, specially in next generation sequencing data analysis.
The platform has a dedicated server that is open in partnership with GMGM and LNCA.

Missions:
– High-throughput sequencing data analysis
– Provision of a dedicated computing and storage infrastructure
– Tool and workflow development
– Training session for biologists and bioinformaticians.

Access website

Expertises

Scientific expertise

  • Bioinformatics
  • NGS (Illumina, nanopore)
  • Plant genome assembly
  • Metagenomics
  • Transcriptomics
  • Epigenetics

Technical expertise

  • Data analysis
  • Genome assembly
  • RNA-seq analysis
  • ChIP-seq analysis
  • Bs-seq analysis
  • SmallRNA-seq analysis
  • Metagenomics 16S

Resources

Main equipments

  • HPC
  • Data storage

Other kinds of rooms

  • Server room

Software resources / Data bases

  • Bioinformatics open source softwares (blast, bowtie, hisat, .....)
  • GitLab
  • JBrowse

Examples of service delivery

  • Provision of a dedicated computing infrastructure
  • Provision of a dedicated storage infrastructure
  • Provision of web services
  • High-throughput sequencing data analysis
  • Training (NGS data analysis, programming, ...)

Core facility partners