CoRTecS

GenomEast

GenomEast Platform

Biologie cellulaire | Imagerie | Biologie moléculaire | Biochimie | Génomique | Biologie systémique | Développement | Biologie structurale

The core facility

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Biologie cellulaire, Imagerie, Biologie moléculaire, Biochimie, Génomique, Biologie systémique, Développement, Biologie structurale GenomEast Platform

  • Scientifical Manager Gilles LAVERNY
  • Technical Manager Christelle THIBAULT CARPENTIER
  • UMR 7104 / UMR_S 1258 - IGBMC / Institut de génétique et de biologie moléculaire et cellulaire
  • CNRS, INSERM, UNIVERSITE DE STRASBOURG, GIE-CERBM
  • Ilkirch-Graffenstaden
  • Monosite
  • Service delivery
    • to the academic community
    • to the socio-economic world
  • Collaborations of research
    • with the academic community
    • to the socio-economic world
  • Affiliated institution of administrative supervision
    • CNRS
    • INSERM
    • UNIVERSITE DE STRASBOURG
    • GIE-CERBM
GenomEast

The GenomEast Platform, hosted at the IGBMC, is a member of the “France Génomique” National Research Infrastructure aimed at maintaining and strengthening French expertise in genomics and bioinformatics (https://www.france-genomique.org). Our platform offers a wide range of services to study genomes, their expression and their regulation, from quality control of the starting material up to the analysis of the data produced. These services are intended for the entire scientific community, national and international, public and private. Apart from these standard services, we regularly collaborate with research teams to set up new applications or protocols. These developments allow us to improve our existing services or enrich our catalog while keeping us at the cutting edge of technology. Finally, the members of our platform are actively involved in various educational programs or continuing trainings for professionals, they organize regular bioinformatics workshops and supervise beginners to advanced students.

Access website

Certifications and accreditations

Core facility documents

Expertises

Scientific expertise

  • Transcriptomics
  • Epigenetics
  • Genomics
  • Bioinformatics
  • Transcription regulation
  • Genetics of rare diseases

Technical expertise

  • RNA-seq
  • ChIP-seq
  • Single cell RNA-seq
  • Exome-seq
  • DNA-seq
  • Small RNA-seq
  • MeDIP-seq
  • ATAC-seq
  • Bioinformatic analyses
  • Statistic analyses

Resources

Main equipments

  • NextSeq 2000 high-throughput sequencer - Illumina
  • Single Cell Platform Chromium iX - 10X Genomics
  • GeoMX Digital Spatial Profiler - NanoString
  • E220 Focused-Ultrasonicator - Covaris
  • IT Infrastructure : computing : 304 cores and Storage : 750 TB
  • Visium CytAssist - 10X Genomics

Software resources / Data bases

  • Laboratory Information Management System (http://ngs-lims.igbmc.fr/)
  • Pipeline for primary analysis and quality control of sequencing data
  • Pipelines for analysis of RNA-seq, ChIP-seq, small RNA-seq and DNA-seq data
  • SeqMINER: an integrated ChIP-seq data interpretation platform

Core facility partners